GEO SRA Library_strategy Sample_characteristics WT/Mutant Tissue GSE64569 N N N N N GSM1574493 SRR1736641 Bisulfite-Seq seedling_12d_WT WT Seedling GSM1574494 SRR1736642 Bisulfite-Seq seedling_12d_ros1-3-knockout ros1-3-knockout Seedling GSM1574495 SRR1736643 Bisulfite-Seq seedling_12d_ros1-4-knockout ros1-4-knockout Seedling GSE108414 N N N N N GSM2897856 SRR6410848 RNA-Seq floral_bud_dnaj1_dnaj2 dnaj2 Floral_bud GSM2897857 SRR6410849 RNA-Seq floral_bud_dnaj1_dnaj2 dnaj2 Floral_bud GSM2897858 SRR6410850 RNA-Seq floral_bud_dnaj1_dnaj2 dnaj2 Floral_bud GSM2897859 SRR6410851 RNA-Seq floral_bud_dnaj1 dnaj1 Floral_bud GSM2897860 SRR6410852 RNA-Seq floral_bud_dnaj1 dnaj1 Floral_bud GSM2897861 SRR6410853 RNA-Seq floral_bud_dnaj1 dnaj1 Floral_bud GSM2897862 SRR6410854 RNA-Seq floral_bud_dnaj2 dnaj2 Floral_bud GSM2897863 SRR6410855 RNA-Seq floral_bud_dnaj2 dnaj2 Floral_bud GSM2897864 SRR6410856 RNA-Seq floral_bud_dnaj2 dnaj2 Floral_bud GSM2897865 SRR6410857 RNA-Seq floral_bud_suvh1_suvh3 suvh3 Floral_bud GSM2897866 SRR6410858 RNA-Seq floral_bud_suvh1_suvh3 suvh3 Floral_bud GSM2897867 SRR6410859 RNA-Seq floral_bud_suvh1_suvh3 suvh3 Floral_bud GSM2897868 SRR6410860 RNA-Seq floral_bud_suvh1 suvh1 Floral_bud GSM2897869 SRR6410861 RNA-Seq floral_bud_suvh1 suvh1 Floral_bud GSM2897870 SRR6410862 RNA-Seq floral_bud_suvh1 suvh1 Floral_bud GSM2897871 SRR6410863 RNA-Seq floral_bud_suvh3 suvh3 Floral_bud GSM2897872 SRR6410864 RNA-Seq floral_bud_suvh3 suvh3 Floral_bud GSM2897873 SRR6410865 RNA-Seq floral_bud_suvh3 suvh3 Floral_bud GSM2897874 SRR6410866 RNA-Seq floral_bud_wt WT Floral_bud GSM2897875 SRR6410867 RNA-Seq floral_bud_wt WT Floral_bud GSM2897876 SRR6410868 RNA-Seq floral_bud_wt WT Floral_bud GSM2897889 SRR6410881 Bisulfite-Seq floral_bud_suvh1_suvh3 suvh3 Floral_bud GSM2897890 SRR6410882 Bisulfite-Seq floral_bud_suvh1_suvh3 suvh3 Floral_bud GSM2897891 SRR6410883 Bisulfite-Seq floral_bud_suvh1 suvh1 Floral_bud GSM2897892 SRR6410884 Bisulfite-Seq floral_bud_suvh1 suvh1 Floral_bud GSM2897893 SRR6410885 Bisulfite-Seq floral_bud_suvh3 suvh3 Floral_bud GSM2897894 SRR6410886 Bisulfite-Seq floral_bud_suvh3 suvh3 Floral_bud GSM2897895 SRR6410887 Bisulfite-Seq floral_bud_wt WT Floral_bud GSM2897896 SRR6410888 Bisulfite-Seq floral_bud_wt WT Floral_bud GSM3349387 SRR7727962 Bisulfite-Seq floral_bud_dnaj1_dnaj2 dnaj2 Floral_bud GSM3349388 SRR7727963 Bisulfite-Seq floral_bud_dnaj1_dnaj2 dnaj2 Floral_bud GSM3349389 SRR7727964 Bisulfite-Seq floral_bud_dnaj1 dnaj1 Floral_bud GSM3349390 SRR7727965 Bisulfite-Seq floral_bud_dnaj1 dnaj1 Floral_bud GSM3349391 SRR7727966 Bisulfite-Seq floral_bud_dnaj2 dnaj2 Floral_bud GSM3349392 SRR7727967 Bisulfite-Seq floral_bud_dnaj2 dnaj2 Floral_bud GSE118063 N N N N N GSM3317928 SRR7639987 Bisulfite-Seq leaf_14d_wt WT Leaf GSM3317929 SRR7639988 Bisulfite-Seq leaf_14d_wt WT Leaf GSM3317930 SRR7639989 Bisulfite-Seq leaf_14d_mutant adcp1-1 Leaf GSM3317931 SRR7639990 Bisulfite-Seq leaf_14d_mutant adcp1-1 Leaf GSM3317932 SRR7639991 RNA-Seq leaf_14d_wt WT Leaf GSM3317933 SRR7639992 RNA-Seq leaf_14d_wt WT Leaf GSM3317934 SRR7639993 RNA-Seq leaf_14d_mutant adcp1-1 Leaf GSM3317935 SRR7639994 RNA-Seq leaf_14d_mutant adcp1-1 Leaf GSE110338 N N N N N GSM2987621 SRR6687449 Bisulfite-Seq seedling_2wk_clsy1 clsy1 Seedling GSM2987622 "SRR6687452,SRR6687451,SRR6687450" Bisulfite-Seq seedling_2wk_clsy2 clsy2 Seedling GSM2987623 "SRR6687453,SRR6687454" Bisulfite-Seq seedling_2wk_clsy3 clsy3 Seedling GSM2987624 SRR6687455 Bisulfite-Seq seedling_2wk_clsy4 clsy4 Seedling GSM2987625 "SRR6687458,SRR6687457,SRR6687456" Bisulfite-Seq seedling_2wk_clsy4nrpd1 clsy4nrpd1 Seedling GSM2987626 SRR6687459 Bisulfite-Seq seedling_2wk_clsy123 clsy123 Seedling GSM2987627 "SRR6687460,SRR6687461" Bisulfite-Seq seedling_2wk_clsy134 clsy134 Seedling GSM2987628 "SRR6687462,SRR6687463" Bisulfite-Seq seedling_2wk_clsy234 clsy234 Seedling GSM2987629 SRR6687464 Bisulfite-Seq seedling_2wk_clsy1234 clsy1234 Seedling GSM2987630 "SRR6687466,SRR6687465" Bisulfite-Seq seedling_2wk_wt WT Seedling GSE116068 N N N N N GSM3208229 SRR7405033 Bisulfite-Seq seedling_wt WT Seedling GSM3208230 SRR7405034 Bisulfite-Seq seedling_arid2_arid3_arid4 arid4 Seedling GSM3208231 SRR7405035 Bisulfite-Seq seedling_epcr1_epcr2 epcr2 Seedling GSM3208235 SRR7405039 RNA-Seq seedling_wt WT Seedling GSM3208236 SRR7405040 RNA-Seq seedling_arid2_arid3_arid4 arid4 Seedling GSM3208237 SRR7405041 RNA-Seq seedling_epcr1_epcr2 epcr2 Seedling GSM3208238 SRR7405042 RNA-Seq seedling_wt WT Seedling GSM3208239 SRR7405043 RNA-Seq seedling_arid2_arid3_arid4 arid4 Seedling GSM3208240 SRR7405044 RNA-Seq seedling_epcr1_epcr2 epcr2 Seedling GSM3208241 SRR7405045 RNA-Seq seedling_wt WT Seedling GSM3208242 SRR7405046 RNA-Seq seedling_arid2_arid3_arid4 arid4 Seedling GSM3208243 SRR7405047 RNA-Seq seedling_epcr1_epcr2 epcr2 Seedling GSE79676 N N N N N GSM2101014 SRR3309264 Bisulfite-Seq leaf WT Leaf GSM2101015 SRR3309265 Bisulfite-Seq leaf WT Leaf GSM2101016 SRR3309266 Bisulfite-Seq leaf WT Leaf GSM2101017 SRR3309267 Bisulfite-Seq leaf WT Leaf GSM2101018 SRR3309268 Bisulfite-Seq leaf WT Leaf GSM2101019 SRR3309269 Bisulfite-Seq leaf WT Leaf GSM2101021 SRR3309271 Bisulfite-Seq leaf WT Leaf GSM2101022 SRR3309272 Bisulfite-Seq leaf WT Leaf GSM2101023 SRR3309273 Bisulfite-Seq leaf WT Leaf GSM2101024 SRR3309274 Bisulfite-Seq leaf WT Leaf GSM2101025 SRR3309275 Bisulfite-Seq leaf WT Leaf GSM2101026 SRR3309276 Bisulfite-Seq leaf WT Leaf GSM2101027 SRR3309277 Bisulfite-Seq leaf WT Leaf GSM2101028 SRR3309278 Bisulfite-Seq leaf WT Leaf GSM2101029 SRR3309279 RNA-Seq leaf WT Leaf GSM2101031 SRR3309281 RNA-Seq leaf WT Leaf GSM2101032 SRR3309282 Bisulfite-Seq leaf WT Leaf GSM2101033 SRR3309283 Bisulfite-Seq leaf WT Leaf GSM2101034 SRR3309284 Bisulfite-Seq leaf WT Leaf GSM2101035 SRR3309285 Bisulfite-Seq leaf WT Leaf GSM2101036 SRR3309286 Bisulfite-Seq leaf WT Leaf GSM2101037 SRR3309287 Bisulfite-Seq leaf WT Leaf GSM2101038 SRR3309288 Bisulfite-Seq leaf WT Leaf GSM2101039 SRR3309289 Bisulfite-Seq leaf WT Leaf GSM2101040 SRR3309290 Bisulfite-Seq leaf WT Leaf GSM2101041 SRR3309291 Bisulfite-Seq leaf WT Leaf GSM2101042 SRR3309292 Bisulfite-Seq leaf WT Leaf GSM2101043 SRR3309293 Bisulfite-Seq leaf WT Leaf GSM2101044 SRR3309294 Bisulfite-Seq leaf WT Leaf GSM2101045 SRR3309295 Bisulfite-Seq leaf WT Leaf GSM2101046 SRR3309296 Bisulfite-Seq leaf WT Leaf GSM2101047 SRR3309297 Bisulfite-Seq leaf WT Leaf GSM2101048 SRR3309298 Bisulfite-Seq leaf WT Leaf GSM2101049 SRR3309299 RNA-Seq leaf WT Leaf GSM2101050 SRR3309300 RNA-Seq leaf WT Leaf GSM2101051 SRR3309301 RNA-Seq leaf WT Leaf GSM2101052 SRR3309302 RNA-Seq leaf WT Leaf GSM2101053 SRR3309303 RNA-Seq leaf WT Leaf GSM2101054 SRR3309304 RNA-Seq leaf WT Leaf GSM2101055 SRR3309305 RNA-Seq leaf WT Leaf GSM2101056 SRR3309306 RNA-Seq leaf WT Leaf GSM2101057 SRR3309307 RNA-Seq leaf WT Leaf GSM2101058 SRR3309308 RNA-Seq leaf WT Leaf GSM2101059 SRR3309309 RNA-Seq leaf WT Leaf GSM2101060 SRR3309310 RNA-Seq leaf WT Leaf GSM2101061 SRR3309311 RNA-Seq leaf WT Leaf GSM2101062 SRR3309312 RNA-Seq leaf WT Leaf GSM2101063 SRR3309313 RNA-Seq leaf WT Leaf GSM2101064 SRR3309314 RNA-Seq leaf WT Leaf GSM2101065 SRR3309315 RNA-Seq leaf WT Leaf GSM2101066 SRR3309316 RNA-Seq leaf WT Leaf GSE105000 N N N N GSM2813751 SRR6176383 Bisulfite-Seq embryo_ssrp1/+Col ssrp1 Embryo GSM2813752 SRR6176384 Bisulfite-Seq embryo_ssrp1/+Col ssrp1 Embryo GSM2813753 SRR6176385 Bisulfite-Seq endosperm_ssrp1/+Col ssrp1 Endosperm GSM2813754 SRR6176386 Bisulfite-Seq endosperm_ssrp1/+Col ssrp1 Endosperm GSM2813755 SRR6176387 Bisulfite-Seq endosperm_ssrp1/+Col ssrp1 Endosperm GSM2813756 SRR6176388 Bisulfite-Seq endosperm_ssrp1/+Col ssrp1 Endosperm GSM2813757 SRR6176389 Bisulfite-Seq embryo_spt16/+Col spt16 Embryo GSM2813758 SRR6176390 Bisulfite-Seq embryo_spt16/+Col spt16 Embryo GSM2813759 SRR6176391 Bisulfite-Seq endosperm_spt16/+Col spt16 Endosperm GSM2813760 SRR6176392 Bisulfite-Seq endosperm_spt16/+Col spt16 Endosperm GSM2813765 SRR6176397 Bisulfite-Seq endosperm_ssrp1/+h1.1_h1.2 ssrp1 Endosperm GSM2813766 SRR6176398 Bisulfite-Seq endosperm_ssrp1/+h1.1_h1.2 ssrp1 Endosperm GSM2813767 SRR6176399 Bisulfite-Seq embryo_wt_Col WT Embryo GSM2813768 SRR6176400 Bisulfite-Seq endosperm_wt_Col WT Endosperm GSM2813769 SRR6176401 Bisulfite-Seq embryo_wt_Col WT Embryo GSE109115 N N N N N GSM2932244 SRR6466208 RNA-Seq inflorescence_ZF-TET1 ZF-TET1 Inflorescence GSM2932245 SRR6466209 RNA-Seq inflorescence_ZF-TET1 ZF-TET1 Inflorescence GSM2932246 SRR6466210 RNA-Seq inflorescence_ZF-TET1 ZF-TET1 Inflorescence GSM2932247 SRR6466211 RNA-Seq inflorescence_ZF-TET1 ZF-TET1 Inflorescence GSM2932268 SRR6466232 RNA-Seq leaf_FWAg4-SunTag14aa FWAg4-SunTag14aa Leaf GSM2932269 SRR6466233 RNA-Seq leaf_FWAg4-SunTag14aa FWAg4-SunTag14aa Leaf GSM2932270 SRR6466234 RNA-Seq leaf_FWAg4-SunTag22aa FWAg4-SunTag22aa Leaf GSM2932271 SRR6466235 RNA-Seq leaf_FWAg4-SunTag22aa FWAg4-SunTag22aa Leaf GSM2932278 SRR6466242 RNA-Seq leaf_ZF1CACTA1-TET1cd ZF1CACTA1-TET1cd Leaf GSM2932280 SRR6466244 Bisulfite-Seq leaf_ZF108-TET1cd ZF108-TET1cd Leaf GSM2932281 SRR6466245 Bisulfite-Seq leaf_ZF108-TET1cd ZF108-TET1cd Leaf GSM2932282 SRR6466246 Bisulfite-Seq leaf_ZF108-TET1cd ZF108-TET1cd Leaf GSM2932283 SRR6466247 Bisulfite-Seq leaf_ZF108-TET1cd ZF108-TET1cd Leaf GSM2932284 SRR6466248 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932285 SRR6466249 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932286 SRR6466250 Bisulfite-Seq leaf_ZF108-TET1cd ZF108-TET1cd Leaf GSM2932287 SRR6466251 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932288 SRR6466252 Bisulfite-Seq leaf_ZF108-TET1cd ZF108-TET1cd Leaf GSM2932289 SRR6466253 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932290 SRR6466254 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932291 SRR6466255 Bisulfite-Seq leaf_FWAg4-SunTag14aa FWAg4-SunTag14aa Leaf GSM2932292 SRR6466256 Bisulfite-Seq leaf_FWAg4-SunTag14aa FWAg4-SunTag14aa Leaf GSM2932293 SRR6466257 Bisulfite-Seq leaf_FWAg4-SunTag22aa FWAg4-SunTag22aa Leaf GSM2932294 SRR6466258 Bisulfite-Seq leaf_FWAg4-SunTag22aa FWAg4-SunTag22aa Leaf GSM2932295 SRR6466259 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932296 SRR6466260 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932297 SRR6466261 Bisulfite-Seq leaf_NG-SunTag14aa NG-SunTag14aa Leaf GSM2932298 SRR6466262 Bisulfite-Seq leaf_NG-SunTag14aa NG-SunTag14aa Leaf GSM2932299 SRR6466263 Bisulfite-Seq leaf_NG-SunTag22aa NG-SunTag22aa Leaf GSM2932300 SRR6466264 Bisulfite-Seq leaf_NG-SunTag22aa NG-SunTag22aa Leaf GSM2932301 SRR6466265 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932302 SRR6466266 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932303 SRR6466267 Bisulfite-Seq leaf_FWAg4-SunTag22aa FWAg4-SunTag22aa Leaf GSM2932304 SRR6466268 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932305 SRR6466269 Bisulfite-Seq leaf_FWAg4-SunTag14aa FWAg4-SunTag14aa Leaf GSM2932306 SRR6466270 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932307 SRR6466271 Bisulfite-Seq leaf_FWAg4-SunTag22aa FWAg4-SunTag22aa Leaf GSM2932308 SRR6466272 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932309 SRR6466273 Bisulfite-Seq leaf_fwa-4 fwa-4 Leaf GSM2932310 SRR6466274 Bisulfite-Seq leaf_ CACTA1g2-SunTag22aa CACTA1g2-SunTag22aa Leaf GSM2932311 SRR6466275 Bisulfite-Seq leaf_ CACTA1g2-SunTag22aa CACTA1g2-SunTag22aa Leaf GSM2932312 SRR6466276 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932313 SRR6466277 Bisulfite-Seq leaf_ZF1CACTA1-TET1cd ZF1CACTA1-TET1cd Leaf GSM2932314 SRR6466278 Bisulfite-Seq leaf_ZF2CACTA1-TET1cd ZF2CACTA1-TET1cd Leaf GSM2932315 SRR6466279 Bisulfite-Seq leaf_ZF1CACTA1-TET1cd ZF1CACTA1-TET1cd Leaf GSM2932316 SRR6466280 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932317 SRR6466281 Bisulfite-Seq leaf_ZF1CACTA1-TET1cd ZF1CACTA1-TET1cd Leaf GSM2932318 SRR6466282 Bisulfite-Seq leaf_Col-0 WT Leaf GSM2932319 SRR6466283 Bisulfite-Seq leaf_Col-0 WT Leaf GSE98872 N N N N N GSM2616974 SRR5534888 Bisulfite-Seq leaf_3wk_T1-pMORC6 T1-pMORC6 Leaf GSE99404 N N N N N GSM2643554 "SRR5631355,SRR5631356" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643555 "SRR5631357,SRR5631358" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643556 "SRR5631359,SRR5631360,SRR5631361" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643557 "SRR5631362,SRR5631363" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643558 "SRR5631364,SRR5631365" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643559 "SRR5631366,SRR5631367" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643560 "SRR5631368,SRR5631369,SRR5631370" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643561 "SRR5631371,SRR5631372" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643562 "SRR5631373,SRR5631374" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643563 "SRR5631375,SRR5631376" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643564 "SRR5631377,SRR5631378,SRR5631379" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643565 "SRR5631380,SRR5631381" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643566 "SRR5631382,SRR5631383" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643567 "SRR5631384,SRR5631385,SRR5631386" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643568 SRR5631387 Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643569 SRR5631388 Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643570 "SRR5631390,SRR5631389" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSM2643571 "SRR5631391,SRR5631392" Bisulfite-Seq aerial_rosette WT Aerial_rosette GSE81407 N N N N N GSM2151929 SRR3501525 RNA-Seq root_wt WT Root GSM2151930 SRR3501526 RNA-Seq root_wt WT Root GSM2151931 SRR3501527 RNA-Seq root_wt WT Root GSM2151932 SRR3501528 RNA-Seq root_otu5_mutant otu5 Root GSM2151933 SRR3501529 RNA-Seq root_otu5_mutant otu5 Root GSM2151934 SRR3501530 RNA-Seq root_otu5_mutant otu5 Root GSM2151935 SRR3501531 RNA-Seq root_wt WT Root GSM2151936 SRR3501532 RNA-Seq root_wt WT Root GSM2151937 SRR3501533 RNA-Seq root_wt WT Root GSM2151938 SRR3501534 RNA-Seq root_otu5_mutant otu5 Root GSM2151939 SRR3501535 RNA-Seq root_otu5_mutant otu5 Root GSM2151940 SRR3501536 RNA-Seq root_otu5_mutant otu5 Root GSM2151941 SRR3501537 Bisulfite-Seq root_wt WT Root GSM2151942 SRR3501538 Bisulfite-Seq root_wt WT Root GSM2151943 SRR3501539 Bisulfite-Seq root_otu5_mutant otu5 Root GSM2151944 SRR3501540 Bisulfite-Seq root_otu5_mutant otu5 Root GSM2151945 SRR3501541 Bisulfite-Seq root_wt WT Root GSM2151947 SRR3501543 Bisulfite-Seq root_wt WT Root GSM2151948 SRR3501544 Bisulfite-Seq root_wt WT Root GSE94710 N N N N N GSM2481288 SRR5239966 Bisulfite-Seq seed_wt WT Seed GSM2481289 SRR5239967 Bisulfite-Seq seed_wt WT Seed GSM2481290 SRR5239968 Bisulfite-Seq seed_wt WT Seed GSM2481291 SRR5239969 Bisulfite-Seq seed_wt WT Seed GSM2481292 SRR5239970 Bisulfite-Seq seed_wt WT Seed GSM2481293 SRR5239971 Bisulfite-Seq seed_wt WT Seed GSM2481294 SRR5239972 Bisulfite-Seq seed_wt WT Seed GSM2481295 SRR5239973 Bisulfite-Seq seed_wt WT Seed GSM2481296 SRR5239974 Bisulfite-Seq seed_wt WT Seed GSM2481297 SRR5239975 Bisulfite-Seq seed_wt WT Seed GSM2481298 SRR5239976 Bisulfite-Seq seed_wt WT Seed GSM2481299 SRR5239977 Bisulfite-Seq seed_wt WT Seed GSM2481300 SRR5239978 Bisulfite-Seq seed_rdd rdd Seed GSM2481301 SRR5239979 Bisulfite-Seq seed_rdd rdd Seed GSM2481302 SRR5239980 Bisulfite-Seq seed_rdd rdd Seed GSM2481303 SRR5239981 Bisulfite-Seq seed_rdd rdd Seed GSM2481304 SRR5239982 Bisulfite-Seq seed_rdd rdd Seed GSM2481305 SRR5239983 Bisulfite-Seq seed_rdd rdd Seed GSM2481306 SRR5239984 Bisulfite-Seq seed_rdd rdd Seed GSM2481307 SRR5239985 Bisulfite-Seq seed_rdd rdd Seed GSM2481308 SRR5239986 Bisulfite-Seq seed_rdd rdd Seed GSM2481309 SRR5239987 Bisulfite-Seq seed_rdd rdd Seed GSM2481310 SRR5239988 Bisulfite-Seq seed_rdd rdd Seed GSM2481311 SRR5239989 Bisulfite-Seq seed_rdd rdd Seed GSE58788 N N N N N GSM1419600 "SRR1451325,SRR1451326,SRR1451327,SRR1451328" Bisulfite-Seq seedling_wt WT Seedling GSE98286 N N N N N GSM2590474 SRR5483614 Bisulfite-Seq seedling_2wk_wt WT Seedling GSM2590475 SRR5483615 Bisulfite-Seq seedling_2wk_nrpd1-3 nrpd1-3 Seedling GSM2590476 SRR5483616 Bisulfite-Seq seedling_2wk_nrpd1-11 nrpd1-11 Seedling GSM2590477 SRR5483617 Bisulfite-Seq seedling_2wk_pkl-1 pkl-1 Seedling GSM2590478 SRR5483618 RNA-Seq seedling_2wk_wt WT Seedling GSM2590479 SRR5483619 RNA-Seq seedling_2wk_nrpd1-3 nrpd1-3 Seedling GSM2590480 SRR5483620 RNA-Seq seedling_2wk_nrpd1-11 nrpd1-11 Seedling GSM2590481 SRR5483621 RNA-Seq seedling_2wk_pkl-1 pkl-1 Seedling GSM2590482 SRR5483622 RNA-Seq seedling_2wk_wt WT Seedling GSM2590483 SRR5483623 RNA-Seq seedling_2wk_nrpd1-3 nrpd1-3 Seedling GSM2590484 SRR5483624 RNA-Seq seedling_2wk_nrpd1-11 nrpd1-11 Seedling GSM2590485 SRR5483625 RNA-Seq seedling_2wk_pkl-1 pkl-1 Seedling GSM2590486 SRR5483626 RNA-Seq seedling_2wk_wt WT Seedling GSM2590487 SRR5483627 RNA-Seq seedling_2wk_nrpd1-3 nrpd1-3 Seedling GSM2590488 SRR5483628 RNA-Seq seedling_2wk_nrpd1-11 nrpd1-11 Seedling GSM2590489 SRR5483629 RNA-Seq seedling_2wk_pkl-1 pkl-1 Seedling GSE64600 N N N N N GSM1575304 SRR1737269 Bisulfite-Seq seedling_10d WT Seedling GSM1575305 SRR1737270 Bisulfite-Seq seedling_10d WT Seedling GSM1575306 SRR1737271 Bisulfite-Seq seedling_10d WT Seedling GSM1575307 SRR1737272 Bisulfite-Seq seedling_10d WT Seedling GSM1575308 SRR1737273 RNA-Seq seedling_10d WT Seedling GSM1575309 SRR1737274 RNA-Seq seedling_10d WT Seedling GSE76648 N N N N N GSM2031992 SRR3091435 Bisulfite-Seq seedling_10d_wt WT Seedling GSM2031993 SRR3091436 Bisulfite-Seq seedling_10d_ddb2-3 ddb2-3 Seedling GSE77966 N N N N N GSM2062687 SRR3171614 Bisulfite-Seq rosette_leaf_3wk_wt WT Rosette_leaf GSM2062688 SRR3171615 Bisulfite-Seq rosette_leaf_3wk_mthfd1-1 mthfd1-1 Rosette_leaf GSM2062689 SRR3192725 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062690 SRR3192726 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062691 SRR3192727 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062692 SRR3192728 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062693 SRR3192729 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062694 SRR3192730 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062695 SRR3192731 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062696 SRR3192732 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062697 SRR3192733 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062698 SRR3192734 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062699 SRR3192735 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062700 SRR3192736 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062701 SRR3192737 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062702 SRR3192738 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062703 SRR3171630 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062704 SRR3171631 Bisulfite-Seq seedling_14d_wt WT Seedling GSM2062705 SRR3171632 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062706 SRR3171633 Bisulfite-Seq seedling_14d_mthfd1-1 mthfd1-1 Seedling GSM2062707 SRR3171634 RNA-Seq rosette_leaf_3wk_mthfd1-1 mthfd1-1 Rosette_leaf GSM2062708 SRR3171635 RNA-Seq rosette_leaf_3wk_mthfd1-1 mthfd1-1 Rosette_leaf GSM2062709 SRR3171636 RNA-Seq rosette_leaf_3wk_wt WT Rosette_leaf GSE66585 N N N N N GSM2047018 SRR3124419 Bisulfite-Seq endosperm WT Endosperm GSM2047019 SRR3124420 Bisulfite-Seq endosperm WT Endosperm GSM2047020 SRR3124421 Bisulfite-Seq endosperm WT Endosperm GSM2047021 SRR3124422 Bisulfite-Seq endosperm WT Endosperm GSE80370 N N N N N GSM2125311 SRR3399468 RNA-Seq seedling_2wk_wt WT Seedling GSM2125312 SRR3399469 RNA-Seq seedling_2wk_morc6_mutant morc6 Seedling GSM2125313 SRR3399470 RNA-Seq seedling_2wk_suvh2suvh9_mutant morc6suvh9 Seedling GSM2125314 SRR3399471 Bisulfite-Seq seedling_2wk_wt WT Seedling GSM2125315 "SRR3399472,SRR3399473" Bisulfite-Seq seedling_2wk_wt WT Seedling GSM2125316 SRR3399474 Bisulfite-Seq seedling_2wk_morc6_mutant morc6 Seedling GSM2125317 "SRR3399475,SRR3399476" Bisulfite-Seq seedling_2wk_morc6_mutant morc6 Seedling GSM2125318 SRR3399477 Bisulfite-Seq seedling_2wk_morc6suvh9_mutant morc6suvh9 Seedling GSM2125319 "SRR3399478,SRR3399479" Bisulfite-Seq seedling_2wk_morc6suvh9_mutant morc6suvh9 Seedling GSM2125320 SRR3399480 Bisulfite-Seq seedling_2wk_suvh2suvh9_mutant morc6suvh9 Seedling GSM2125321 "SRR3399482,SRR3399481" Bisulfite-Seq seedling_2wk_suvh2suvh9_mutant morc6suvh9 Seedling GSM2125322 SRR3399483 Bisulfite-Seq seedling_2wk_suvh9_mutant morc6suvh9 Seedling GSM2125323 "SRR3399485,SRR3399484" Bisulfite-Seq seedling_2wk_suvh9_mutant morc6suvh9 Seedling GSE80302 N N N N N GSM2124018 SRR3384752 Bisulfite-Seq seedling_10d_wt WT Seedling GSM2124019 SRR3384753 Bisulfite-Seq seedling_10d_pial1/2 pial1/2 Seedling GSM2124020 SRR3384754 Bisulfite-Seq seedling_10d_nrpe1 nrpe1 Seedling GSM2124021 SRR3384755 Bisulfite-Seq seedling_10d_mom1 mom1 Seedling GSM2124022 SRR3384756 Bisulfite-Seq seedling_10d_wt WT Seedling GSE70912 N N N N N GSM1821768 "SRR2102617,SRR2102618,SRR2102619" Bisulfite-Seq seedling_2wk_wt WT Seedling GSM1821769 "SRR2102620,SRR2102621" Bisulfite-Seq seedling_2wk_wt WT Seedling GSM1821770 "SRR2102622,SRR2102623,SRR2102624" Bisulfite-Seq seedling_2wk_nrpd1-3 nrpd1-3 Seedling GSM1821771 "SRR2102625,SRR2102626,SRR2102627" Bisulfite-Seq seedling_2wk_nrpd1-3 nrpd1-3 Seedling GSM1821772 "SRR2102628,SRR2102629,SRR2102630" Bisulfite-Seq seedling_2wk_nrpd1-11 nrpd1-11 Seedling GSM1821773 "SRR2102631,SRR2102632,SRR2102633" Bisulfite-Seq seedling_2wk_nrpd1-11 nrpd1-11 Seedling GSM1821774 SRR2102634 Bisulfite-Seq seedling_2wk_dcl2/3/4 dcl2/3/4 Seedling GSM1821775 SRR2102635 Bisulfite-Seq seedling_2wk_dcl2/3/4 dcl2/3/4 Seedling GSM1821776 SRR2102636 Bisulfite-Seq seedling_2wk_rdr1/2/6 rdr1/2/6 Seedling GSM1821777 SRR2102637 Bisulfite-Seq seedling_2wk_rdr1/2/6 rdr1/2/6 Seedling GSM1821778 SRR2102638 Bisulfite-Seq seedling_2wk_ddc ddc Seedling GSM1821779 SRR2102639 Bisulfite-Seq seedling_2wk_ddc ddc Seedling GSM1821780 SRR2102640 Bisulfite-Seq seedling_2wk_met1-1 met1-1 Seedling GSM1821781 SRR2102641 Bisulfite-Seq seedling_2wk_met1-1 met1-1 Seedling GSM1821782 SRR2102642 Bisulfite-Seq seedling_2wk_dcl1-100 dcl1-100 Seedling GSM1821783 SRR2102643 Bisulfite-Seq seedling_2wk_ago4/6 ago4/6 Seedling GSM1821784 SRR2102644 Bisulfite-Seq seedling_2wk_ago4/6 ago4/6 Seedling GSM1821785 SRR2102645 Bisulfite-Seq seedling_2wk_wt WT Seedling GSM1821786 SRR2102646 Bisulfite-Seq seedling_2wk_wt WT Seedling GSM1821787 SRR2102647 Bisulfite-Seq seedling_2wk_dcl2/3/4 dcl2/3/4 Seedling GSM1821788 SRR2102648 Bisulfite-Seq seedling_2wk_dcl2/3/4 dcl2/3/4 Seedling GSM1821789 SRR2102649 Bisulfite-Seq seedling_2wk_dcl1/2/3/4 dcl1/2/3/4 Seedling GSM1821790 SRR2102650 Bisulfite-Seq seedling_2wk_dcl1/2/3/4 dcl1/2/3/4 Seedling GSE61439 N N N N GSM1848703 SRR2155683 Bisulfite-Seq immature_inflorescence_wt WT Immature_inflorescence GSM1848704 SRR2155684 Bisulfite-Seq immature_inflorescence_wt WT Immature_inflorescence GSM1848705 SRR2155685 Bisulfite-Seq immature_inflorescence_nrpb2 nrpb2 Immature_inflorescence GSM1848706 SRR2155686 Bisulfite-Seq immature_inflorescence_nrpb2 nrpb2 Immature_inflorescence GSE67798 N N N N N GSM1656320 SRR1970647 Bisulfite-Seq seedling_wt WT Seedling GSM1656321 SRR1970648 Bisulfite-Seq seedling_brat1 brat1 Seedling GSM1656322 SRR1970649 Bisulfite-Seq seedling_brp1 brp1 Seedling GSM1656323 SRR1970650 Bisulfite-Seq seedling_ros1 ros1 Seedling GSE58790 N N N N N GSM1419610 SRR1451436 Bisulfite-Seq seedling_ros1-13 ros1-13 Seedling GSE59712 N N N N N GSM1444040 "SRR1523586,SRR1523587,SRR1523588,SRR1523589,SRR1523590,SRR1523591" Bisulfite-Seq seedling_wt WT Seedling GSM1444041 "SRR1523592,SRR1523593,SRR1523594,SRR1523595" Bisulfite-Seq seedling_idm3-3 idm3-3 Seedling GSM1444042 "SRR1523596,SRR1523597,SRR1523598,SRR1523599,SRR1523600,SRR1523601" Bisulfite-Seq seedling_mbd7-2 mbd7-2 Seedling GSE62801 N N N N N GSM1462768 SRR1533696 Bisulfite-Seq leaf_3wk_frg1_frg2 frg2 Leaf GSE58217 N N N N N GSM1403942 SRR1333843 Bisulfite-Seq leaf_3wk WT Leaf GSM1403943 SRR1333844 Bisulfite-Seq leaf_3wk WT Leaf GSM1403944 SRR1333845 Bisulfite-Seq leaf_3wk WT Leaf GSM1403945 SRR1333846 Bisulfite-Seq leaf_3wk WT Leaf GSM1403946 SRR1333847 Bisulfite-Seq leaf_3wk WT Leaf GSM1403947 SRR1333848 Bisulfite-Seq leaf_3wk WT Leaf GSM1403948 SRR1333849 Bisulfite-Seq leaf_3wk WT Leaf GSM1403949 SRR1333850 Bisulfite-Seq leaf_3wk WT Leaf GSM1403950 SRR1333851 Bisulfite-Seq leaf_3wk WT Leaf GSM1403951 SRR1333852 Bisulfite-Seq leaf_3wk WT Leaf GSM1403952 SRR1333853 Bisulfite-Seq leaf_3wk WT Leaf GSM1403953 SRR1333854 Bisulfite-Seq leaf_3wk WT Leaf GSM1403954 SRR1333855 Bisulfite-Seq leaf_3wk WT Leaf GSM1403955 SRR1333856 Bisulfite-Seq leaf_3wk WT Leaf GSM1403956 SRR1333857 Bisulfite-Seq leaf_3wk WT Leaf GSM1403957 SRR1333858 Bisulfite-Seq leaf_3wk WT Leaf GSM1403958 SRR1333859 Bisulfite-Seq leaf_3wk WT Leaf GSM1403959 SRR1333860 Bisulfite-Seq leaf_3wk WT Leaf GSE52814 N N N N N GSM1276483 SRR1039895 Bisulfite-Seq embryo_6d WT Embryo GSM1276484 "SRR1039896,SRR1039897" Bisulfite-Seq endosperm_6d WT Endosperm GSM1276485 SRR1039898 Bisulfite-Seq embryo_6d WT Embryo GSM1276486 SRR1039899 Bisulfite-Seq endosperm_6d WT Endosperm GSM1276487 SRR1039900 Bisulfite-Seq embryo_6d WT Embryo GSM1276488 SRR1039901 Bisulfite-Seq endosperm_6d WT Endosperm GSM1276489 SRR1039902 Bisulfite-Seq embryo_6d WT Embryo GSM1276490 SRR1039903 Bisulfite-Seq endosperm_6d WT Endosperm GSM1276491 SRR1039904 Bisulfite-Seq embryo_6d WT Embryo GSM1276492 SRR1039905 Bisulfite-Seq endosperm_6d WT Endosperm GSM1276493 SRR1039906 Bisulfite-Seq embryo_6d WT Embryo GSM1276494 SRR1039907 Bisulfite-Seq endosperm_6d WT Endosperm GSM1276495 SRR1039908 Bisulfite-Seq embryo_6d WT Embryo GSM1276496 SRR1039909 Bisulfite-Seq endosperm_6d WT Endosperm GSM1276497 SRR1039910 RNA-Seq embryo_6d WT Embryo GSM1276498 SRR1039911 RNA-Seq endosperm_6d WT Endosperm GSM1276499 SRR1039912 RNA-Seq embryo_6d WT Embryo GSM1276500 SRR1039913 RNA-Seq endosperm_6d WT Endosperm GSM1276501 SRR1039914 RNA-Seq embryo_6d WT Embryo GSM1276502 SRR1039915 RNA-Seq endosperm_6d WT Endosperm GSM1276503 SRR1039916 RNA-Seq embryo_6d WT Embryo GSM1276504 SRR1039917 RNA-Seq endosperm_6d WT Endosperm GSM1276505 SRR1039918 RNA-Seq endosperm_6d WT Embryo GSM1276507 SRR1039920 RNA-Seq embryo_6d WT Endosperm GSM1276508 SRR1039921 RNA-Seq endosperm_6d WT Embryo GSM1276509 SRR1039922 RNA-Seq endosperm_6d WT Endosperm GSM1276511 SRR1039924 RNA-Seq embryo_6d WT Embryo GSM1276512 SRR1039925 RNA-Seq endosperm_6d WT Endosperm GSM1276513 SRR1039926 RNA-Seq embryo_6d WT Embryo GSM1276514 SRR1039927 RNA-Seq endosperm_6d WT Endosperm GSM1428944 SRR1508242 RNA-Seq endosperm_6d WT Endosperm GSM1428945 SRR1508243 RNA-Seq endosperm_6d WT Endosperm GSM1428946 SRR1508244 RNA-Seq endosperm_6d WT Endosperm GSM1428947 SRR1508245 RNA-Seq endosperm_6d WT Endosperm GSM1428948 SRR1508246 RNA-Seq endosperm_6d WT Endosperm GSM1428949 SRR1508247 RNA-Seq endosperm_6d WT Endosperm GSE52041 N N N N N GSM1257934 SRR1023825 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM1257937 SRR1023828 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM1257938 SRR1023829 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM1257939 SRR1023830 Bisulfite-Seq leaf_3wk_suvh2_suvh9 suvh9 Leaf GSE49090 N N N N N GSM1193626 SRR942022 RNA-Seq leaf_3wk_wt WT Leaf GSM1193627 SRR942023 RNA-Seq leaf_3wk_jmj14-1 jmj14-1 Leaf GSM1193628 SRR942024 RNA-Seq leaf_3wk_ ldl1-2_ldl2 ldl2 Leaf GSM1193629 SRR942025 RNA-Seq leaf_3wk_jmj14-1_ldl1-2_ldl2 ldl2 Leaf GSM1193638 SRR942034 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM1193639 SRR942035 Bisulfite-Seq leaf_3wk_jmj14-1 jmj14-1 Leaf GSM1193640 SRR942036 Bisulfite-Seq leaf_3wk_ ldl1-2_ldl2 ldl2 Leaf GSM1193641 SRR942037 Bisulfite-Seq leaf_3wk_jmj14-1_ldl1-2_ldl2 ldl2 Leaf GSE51764 N N N N N GSM1252084 SRR1019219 Bisulfite-Seq seedling_14d_wt WT Seedling GSM1252085 SRR1019220 Bisulfite-Seq seedling_14d_edm2-4_mutant edm2-4 Seedling GSM1252086 SRR1019221 RNA-Seq seedling_14d_wt WT Seedling GSM1252087 SRR1019222 RNA-Seq seedling_14d_edm2-4_mutant edm2-4 Seedling GSE45368 N N N N N GSM1103248 SRR788218 Bisulfite-Seq seedling_10d_nrpd1-4_mutant nrpd1-4 Seedling GSM1103249 SRR788219 Bisulfite-Seq seedling_10d_shh1-1_mutant shh1-1 Seedling GSM1103250 SRR788220 Bisulfite-Seq seedling_10d_drm2-2_mutant drm2-2 Seedling GSM1103251 SRR788221 Bisulfite-Seq seedling_10d_wt WT Seedling GSM1103252 SRR788222 Bisulfite-Seq seedling_10d_shh1-1 shh1-1 Seedling GSM1103253 SRR788223 Bisulfite-Seq seedling_10d_shh1_16_point_mutant shh1_16 Seedling GSM1103254 SRR788224 Bisulfite-Seq seedling_10d_shh1_32_point_mutant shh1_32 Seedling GSM1103255 SRR788225 Bisulfite-Seq seedling_10d_shh1_65_point_mutant shh1_65 Seedling GSM1103256 "SRR788226,SRR788227" Bisulfite-Seq seedling_10d_shh1_109_point_mutant shh1_109 Seedling GSM1103257 SRR788228 Bisulfite-Seq seedling_10d_shh1_240_point_mutant shh1_240 Seedling GSE38286 N N N N N GSM938370 SRR501624 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM938371 SRR501625 Bisulfite-Seq leaf_3wk_atxr56 atxr56 Leaf GSM938372 SRR501626 Bisulfite-Seq leaf_3wk_ddm1atxr56 ddm1atxr56 Leaf GSE39247 N N N N N GSM958801 SRR520367 Bisulfite-Seq seedling_10d_wt WT Seedling GSM958802 SRR520368 Bisulfite-Seq seedling_10d_nrpe1-12_mutant nrpe1-12 Seedling GSE36143 N N N N N GSM881756 SRR420834 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM881757 SRR420835 Bisulfite-Seq leaf_3wk_drm2-2_mutant drm2-2 Leaf GSM881758 SRR420836 Bisulfite-Seq leaf_3wk idn2_mutant idn2 Leaf GSM881759 SRR420837 Bisulfite-Seq leaf_3wk_idnl1-1_dnl2-1_double_mutant idnl1-1_dnl2-1_double Leaf GSM881760 SRR420838 Bisulfite-Seq leaf_3wk_idn2-1_idnl1-1_idnl2-1_triple_mutant idn2-1_idnl1-1_idnl2-1_triple Leaf GSE37644 N N N N N GSM925645 SRR493037 RNA-Seq leaf_crt1-4 crt1-4 Leaf GSM925646 SRR493038 RNA-Seq leaf_crh6-3 crh6-3 Leaf GSM925657 SRR493049 Bisulfite-Seq leaf_crt1-4 crt1-4 Leaf GSM925658 SRR493050 Bisulfite-Seq leaf_crh6-3 crh6-3 Leaf GSE15922 N N N N GSM399597 "SRR017252,SRR017253,SRR017254,SRR017255,SRR017256" Bisulfite-Seq embryo_wt WT Embryo GSM399598 "SRR017257,SRR017258,SRR017259,SRR017260,SRR017261" Bisulfite-Seq endosperm_wt WT Endosperm GSM399599 "SRR017262,SRR017263,SRR017266,SRR017265,SRR017264" Bisulfite-Seq endosperm_dme_mutant dme Endosperm GSM399600 "SRR017267,SRR017268,SRR017269" Bisulfite-Seq aerial_tissues_wt WT Aerial_tissues GSE78836 N N N N N GSM2078395 SRR3199788 RNA-Seq leaf_3wk_wt WT Leaf GSM2078396 SRR3199789 RNA-Seq leaf_3wk_wt WT Leaf GSM2078397 SRR3199790 RNA-Seq leaf_3wk_wt WT Leaf GSM2078403 SRR3199796 RNA-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078404 SRR3199797 RNA-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078405 SRR3199798 RNA-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078406 SRR3199799 RNA-Seq leaf_3wk_wt WT Leaf GSM2078407 SRR3199800 RNA-Seq leaf_3wk_wt WT Leaf GSM2078408 SRR3199801 RNA-Seq leaf_3wk_wt WT Leaf GSM2078409 SRR3199802 RNA-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078410 SRR3199803 RNA-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078411 SRR3199804 RNA-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078418 SRR3199811 RNA-Seq leaf_3wk_atmorc1/2/4/5/6/7 atmorc1/2/4/5/6/7 Leaf GSM2078419 SRR3199812 RNA-Seq leaf_3wk_atmorc1/2/4/5/6/7 atmorc1/2/4/5/6/7 Leaf GSM2078420 SRR3199813 RNA-Seq leaf_3wk_atmorc1/2/4/5/6/7 atmorc1/2/4/5/6/7 Leaf GSM2078421 SRR3199814 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM2078422 SRR3199815 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM2078423 SRR3199816 Bisulfite-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078424 SRR3199817 Bisulfite-Seq leaf_3wk_atmorc4/7 atmorc4/7 Leaf GSM2078425 SRR3199818 Bisulfite-Seq leaf_3wk_atmorc1/2/4/5/6/7 atmorc1/2/4/5/6/7 Leaf GSM2078426 SRR3199819 Bisulfite-Seq leaf_3wk_atmorc1/2/4/5/6/7 atmorc1/2/4/5/6/7 Leaf GSE58787 N N N N N GSM1419597 SRR1451306 Bisulfite-Seq seedling_wt WT Seedling GSM1419598 SRR1451307 Bisulfite-Seq seedling_idm3-1_mutant idm3-1 Seedling GSM1419599 SRR1451308 Bisulfite-Seq seedling_mbd7-1_mutant mbd7-1 Seedling GSE39901 N N N N N GSM1706497 "SRR2056571,SRR2056572,SRR2056573,SRR2056574,SRR2056575,SRR2056576,SRR2056577,SRR2056578,SRR2056579,SRR2056580,SRR2056581,SRR2056582,SRR2056583,SRR2056584,SRR2056585,SRR2056586,SRR2056587,SRR2056588,SRR2056589,SRR2056590,SRR2056591,SRR2056592,SRR2056593,SRR2056594,SRR2056595,SRR2056596,SRR2056597,SRR2056598,SRR2056599,SRR2056600,SRR2056601,SRR2056602,SRR2056603,SRR2056604,SRR2056605,SRR2056606,SRR2056607,SRR2056608,SRR2056609,SRR2056610,SRR2056611,SRR2056612,SRR2056613,SRR2056614,SRR2056615,SRR2056616,SRR2056617,SRR2056618,SRR2056619,SRR2056620,SRR2056621,SRR2056622,SRR2056623,SRR2056624,SRR2056625,SRR2056626,SRR2056627,SRR2056628,SRR2056629,SRR2056630,SRR2056631,SRR2056632,SRR2056633,SRR2056634,SRR2056635,SRR2056636,SRR2056637,SRR2056638,SRR2056639,SRR2056640,SRR2056641,SRR2056642,SRR2056643,SRR2056644,SRR2056645,SRR2056646,SRR2056647,SRR2056648,SRR2056649,SRR2056650,SRR2056651,SRR2056652,SRR2056653,SRR2056654,SRR2056655,SRR2056656,SRR2056657,SRR2056658,SRR2056659,SRR2056660,SRR2056661,SRR2056662,SRR2056663,SRR2056664,SRR2056665,SRR2056666" Bisulfite-Seq leaf_3wk_wt WT Leaf GSM1706498 "SRR2056667,SRR2056668,SRR2056669,SRR2056670,SRR2056671,SRR2056672,SRR2056673,SRR2056674,SRR2056675,SRR2056676,SRR2056677,SRR2056678,SRR2056679,SRR2056680,SRR2056681,SRR2056682,SRR2056683,SRR2056684,SRR2056685,SRR2056686,SRR2056687,SRR2056688,SRR2056689,SRR2056690,SRR2056691,SRR2056692,SRR2056693,SRR2056694,SRR2056695,SRR2056696,SRR2056697,SRR2056698,SRR2056699,SRR2056700,SRR2056701,SRR2056702,SRR2056703,SRR2056704,SRR2056705,SRR2056706,SRR2056707,SRR2056708,SRR2056709,SRR2056710,SRR2056711,SRR2056712,SRR2056713,SRR2056714,SRR2056715,SRR2056716,SRR2056717,SRR2056718,SRR2056719,SRR2056720,SRR2056721,SRR2056722,SRR2056723,SRR2056724,SRR2056725,SRR2056726,SRR2056727,SRR2056728,SRR2056729,SRR2056730,SRR2056731,SRR2056732,SRR2056733,SRR2056734,SRR2056735,SRR2056736,SRR2056737,SRR2056738,SRR2056739,SRR2056740,SRR2056741,SRR2056742,SRR2056743,SRR2056744,SRR2056745,SRR2056746,SRR2056747,SRR2056748,SRR2056749,SRR2056750,SRR2056751,SRR2056752,SRR2056753,SRR2056754,SRR2056755,SRR2056756,SRR2056757,SRR2056758,SRR2056759,SRR2056760,SRR2056761,SRR2056762" Bisulfite-Seq leaf_3wk_hda6-6 hda6-6 Leaf GSM1706499 "SRR2056763,SRR2056764,SRR2056765,SRR2056766,SRR2056767,SRR2056768,SRR2056769,SRR2056770,SRR2056771,SRR2056772,SRR2056773,SRR2056774,SRR2056775,SRR2056776,SRR2056777,SRR2056778,SRR2056779,SRR2056780,SRR2056781,SRR2056782,SRR2056783,SRR2056784,SRR2056785,SRR2056786,SRR2056787,SRR2056788,SRR2056795,SRR2056797,SRR2056798,SRR2056799,SRR2056800,SRR2056801,SRR2056802,SRR2056803,SRR2056804,SRR2056805,SRR2056807,SRR2056810,SRR2056811,SRR2056813,SRR2056817,SRR2056818,SRR2056821,SRR2056822,SRR2056823,SRR2056824,SRR2056825,SRR2056826,SRR2056827,SRR2056828,SRR2056830,SRR2056831,SRR2056832,SRR2056834,SRR2056835,SRR2056836,SRR2056837,SRR2056838,SRR2056841,SRR2056842,SRR2056843,SRR2056845,SRR2056847,SRR2056848,SRR2056849,SRR2056850,SRR2056851,SRR2056852,SRR2056853,SRR2056854,SRR2056855,SRR2056856,SRR2056857,SRR2056858,SRR2056846,SRR2056844,SRR2056840,SRR2056839,SRR2056833,SRR2056829,SRR2056820,SRR2056819,SRR2056816,SRR2056815,SRR2056814,SRR2056812,SRR2056809,SRR2056808,SRR2056806,SRR2056796,SRR2056794,SRR2056793,SRR2056792,SRR2056791,SRR2056790,SRR2056789" Bisulfite-Seq leaf_3wk_hda6-6 hda6-6 Leaf GSM1706500 "SRR2056859,SRR2056860,SRR2056861,SRR2056862,SRR2056863,SRR2056864,SRR2056865,SRR2056866,SRR2056867,SRR2056868,SRR2056869,SRR2056870,SRR2056871,SRR2056872,SRR2056873,SRR2056874,SRR2056875,SRR2056876,SRR2056877,SRR2056878,SRR2056879,SRR2056880,SRR2056881,SRR2056882,SRR2056883,SRR2056884,SRR2056885,SRR2056886,SRR2056887,SRR2056888,SRR2056889,SRR2056890,SRR2056891,SRR2056892,SRR2056893,SRR2056894,SRR2056895,SRR2056896,SRR2056897,SRR2056898,SRR2056899,SRR2056900,SRR2056901,SRR2056902,SRR2056903,SRR2056904,SRR2056905,SRR2056906,SRR2056907,SRR2056908,SRR2056909,SRR2056910,SRR2056911,SRR2056912,SRR2056913,SRR2056914,SRR2056915,SRR2056916,SRR2056917,SRR2056918,SRR2056919,SRR2056920,SRR2056921,SRR2056922,SRR2056923,SRR2056924,SRR2056925,SRR2056926,SRR2056927,SRR2056928,SRR2056929,SRR2056930,SRR2056931,SRR2056932,SRR2056933,SRR2056934,SRR2056935,SRR2056936,SRR2056937,SRR2056938,SRR2056939,SRR2056940,SRR2056941,SRR2056942,SRR2056943,SRR2056944,SRR2056945,SRR2056946,SRR2056947,SRR2056948,SRR2056949,SRR2056950,SRR2056951,SRR2056952,SRR2056953,SRR2056954" Bisulfite-Seq leaf_3wk_hda6-7 hda6-7 Leaf GSM980987 SRR534193 Bisulfite-Seq leaf_3wk_wt WT Leaf GSM980988 SRR534194 Bisulfite-Seq leaf_3wk_ago1 ago1 Leaf GSM980989 SRR534195 Bisulfite-Seq leaf_3wk_ago2 ago2 Leaf GSM980990 SRR1793912 Bisulfite-Seq leaf_3wk_ago3 ago3 Leaf GSM980991 SRR534197 Bisulfite-Seq leaf_3wk_ago4 ago4 Leaf GSM980992 SRR534198 Bisulfite-Seq leaf_3wk_ago5 ago5 Leaf GSM980993 SRR534199 Bisulfite-Seq leaf_3wk_ago6 ago6 Leaf GSM980994 SRR534200 Bisulfite-Seq leaf_3wk_ago7 ago7 Leaf GSM980995 SRR534201 Bisulfite-Seq leaf_3wk_ago8 ago8 Leaf GSM980997 SRR534203 Bisulfite-Seq leaf_3wk_ago10 ago10 Leaf GSM980998 SRR534204 Bisulfite-Seq leaf_3wk_atxr5/6 atxr5/6 Leaf GSM980999 SRR534205 Bisulfite-Seq leaf_3wk_bru1 bru1 Leaf GSM981000 SRR534206 Bisulfite-Seq leaf_3wk_clsy1 clsy1 Leaf GSM981001 SRR534207 Bisulfite-Seq leaf_3wk_cmt1 cmt1 Leaf GSM981003 SRR534209 Bisulfite-Seq leaf_3wk_cmt3 cmt3 Leaf GSM981005 SRR534211 Bisulfite-Seq leaf_3wk_dcl3 dcl3 Leaf GSM981006 SRR534212 Bisulfite-Seq leaf_3wk_dcl4 dcl4 Leaf GSM981007 SRR534213 Bisulfite-Seq leaf_3wk_dcl2/4 dcl2/4 Leaf GSM981008 SRR534214 Bisulfite-Seq leaf_3wk_dcl2/3/4 dcl2/3/4 Leaf GSM981009 SRR534215 Bisulfite-Seq leaf_3wk_ddm1 ddm1 Leaf GSM981010 "SRR534217,SRR534216" Bisulfite-Seq leaf_3wk_dms3 dms3 Leaf GSM981012 SRR534219 Bisulfite-Seq leaf_3wk_dnmt2_cmt3 cmt3 Leaf GSM981013 SRR534220 Bisulfite-Seq leaf_3wk_dnmt2_drm12 drm12 Leaf GSM981014 SRR534221 Bisulfite-Seq leaf_3wk_drd1 drd1 Leaf GSM981015 "SRR534223,SRR534222" Bisulfite-Seq leaf_3wk_drm1/2 drm1/2 Leaf GSM981016 SRR534224 Bisulfite-Seq leaf_3wk_drm1/2_cmt3 cmt3 Leaf GSM981017 SRR534225 Bisulfite-Seq leaf_3wk_drm3 drm3 Leaf GSM981018 SRR534226 Bisulfite-Seq leaf_3wk_fas2 fas2 Leaf GSM981019 SRR534227 Bisulfite-Seq leaf_3wk_fca fca Leaf GSM981020 SRR534228 Bisulfite-Seq leaf_3wk_fca_fpa fpa Leaf GSM981021 SRR534229 Bisulfite-Seq leaf_3wk_fld fld Leaf GSM981022 SRR534230 Bisulfite-Seq leaf_3wk_fpa fpa Leaf GSM981023 SRR534231 Bisulfite-Seq leaf_3wk_fve fve Leaf GSM981026 SRR534234 Bisulfite-Seq leaf_3wk_ibm1 ibm1 Leaf GSM981027 SRR534235 Bisulfite-Seq leaf_3wk_idn2 idn2 Leaf GSM981028 SRR534236 Bisulfite-Seq leaf_3wk_idn2_idnl1/2 idnl1/2 Leaf GSM981029 SRR534237 Bisulfite-Seq leaf_3wk_idnl1_idnl2 idnl2 Leaf GSM981030 SRR534238 Bisulfite-Seq leaf_3wk_ktf1 ktf1 Leaf GSM981031 SRR534239 Bisulfite-Seq leaf_3wk_met1 met1 Leaf GSM981032 SRR534240 Bisulfite-Seq leaf_3wk_met1_cmt3 cmt3 Leaf GSM981033 SRR534241 Bisulfite-Seq leaf_3wk_met1_het het Leaf GSM981034 SRR534242 Bisulfite-Seq leaf_3wk_met1_wt WT Leaf GSM981035 SRR534243 Bisulfite-Seq leaf_3wk_met2 met2 Leaf GSM981036 SRR534178 Bisulfite-Seq leaf_3wk_mom1 mom1 Leaf GSM981037 SRR534179 Bisulfite-Seq leaf_3wk_msi2 msi2 Leaf GSM981038 SRR534180 Bisulfite-Seq leaf_3wk_nrpb2 nrpb2 Leaf GSM981039 SRR534181 Bisulfite-Seq leaf_3wk_nrpd1 nrpd1 Leaf GSM981040 SRR534182 Bisulfite-Seq leaf_3wk_nrpe1 nrpe1 Leaf GSM981041 SRR534183 Bisulfite-Seq leaf_3wk_rdd rdd Leaf GSM981042 SRR534184 Bisulfite-Seq leaf_3wk_rdm1 rdm1 Leaf GSM981043 SRR534185 Bisulfite-Seq leaf_3wk_rdr1 rdr1 Leaf GSM981044 SRR534186 Bisulfite-Seq leaf_3wk_rdr2 rdr2 Leaf GSM981045 SRR534187 Bisulfite-Seq leaf_3wk_rdr6 rdr6 Leaf GSM981046 SRR534188 Bisulfite-Seq leaf_3wk_ref6 ref6 Leaf GSM981047 SRR534189 Bisulfite-Seq leaf_3wk_ros3 ros3 Leaf GSM981048 SRR534190 Bisulfite-Seq leaf_3wk_rpa2 rpa2 Leaf GSM981049 SRR534191 Bisulfite-Seq leaf_3wk_sde3 sde3 Leaf GSM981050 SRR534192 Bisulfite-Seq leaf_3wk_sde5 sde5 Leaf GSM981051 SRR534244 Bisulfite-Seq leaf_3wk_sdg2 sdg2 Leaf GSM981052 SRR534245 Bisulfite-Seq leaf_3wk_sdg8 sdg8 Leaf GSM981053 SRR534246 Bisulfite-Seq leaf_3wk_sgs3 sgs3 Leaf GSM981054 SRR534247 Bisulfite-Seq leaf_3wk_suvh1 suvh1 Leaf GSM981055 SRR534248 Bisulfite-Seq leaf_3wk_suvh2 suvh2 Leaf GSM981056 SRR534249 Bisulfite-Seq leaf_3wk_suvh3 suvh3 Leaf GSM981057 SRR534250 Bisulfite-Seq leaf_3wk_suvh4/kyp suvh4/kyp Leaf GSM981058 SRR534251 Bisulfite-Seq leaf_3wk_suvh5 suvh5 Leaf GSM981059 SRR534252 Bisulfite-Seq leaf_3wk_suvh6 suvh6 Leaf GSM981060 SRR534253 Bisulfite-Seq leaf_3wk_suvh4/5/6 suvh4/5/6 Leaf GSM981062 SRR534255 Bisulfite-Seq leaf_3wk_suvh8 suvh8 Leaf GSM981063 SRR534256 Bisulfite-Seq leaf_3wk_suvh9 suvh9 Leaf GSM981064 SRR534257 Bisulfite-Seq leaf_3wk_suvh10 suvh10 Leaf GSM981065 SRR534258 Bisulfite-Seq leaf_3wk_suvr1 suvr1 Leaf GSM981066 SRR534259 Bisulfite-Seq leaf_3wk_suvr2 suvr2 Leaf GSM981068 SRR534261 Bisulfite-Seq leaf_3wk_suvr5 suvr5 Leaf GSM981069 SRR534262 Bisulfite-Seq leaf_3wk_suvr1/2/3/4/5 suvr1/2/3/4/5 Leaf GSM981070 SRR534263 Bisulfite-Seq leaf_3wk_vim1 vim1 Leaf GSM981071 SRR534264 Bisulfite-Seq leaf_3wk_vim2 vim2 Leaf GSM981072 SRR534265 Bisulfite-Seq leaf_3wk_vim3 vim3 Leaf GSM981073 SRR534266 Bisulfite-Seq leaf_3wk_vim1/2/3 vim1/2/3 Leaf